I've been meaning to post my recent findings...
If you've read thru the entire thread where I discussed some of the mods I have done to my bike, as well as some of the things I did that had an affect as I tried to eliminate the hot running surging, one of the first things that stood out as a partial fix were the velocity stacks.
The arrangement of the velocity stacks in this configuration, “Left Front: Short”, “Right Front: Tall”, “Left Rear: Tall”, and “Right Rear: Short”, made a definite difference. I commute to work on my VFR every day, so I believe I ride it enough to be able to tell when something makes it run better or worse. The velocity stacks in the above arrangement seemed to help but didn’t totally eliminate the hot surging.
I had already done most of the electrical mods, such as the 30-amp fuse fix, left-side blue connector ground wire, and so on, but since my bike is fairly new and the wiring seems to be okay so far, I thought of these mods/upgrades as preventive measures since none of them affected the surging. What I didn’t realize is that my particular surging problem was related to the electrical system.
About 3-4 months ago I noticed that my barely 2-year-old battery was starting to act up. In the summer mornings it seemed as though the engine was becoming harder to start, and when I hit the starter button it took several revolutions until the engine started. Work with me on the sound effects here, but it was like “woo woo, woo woo, woo woo, woo woo, vroom!!!” Slow tickover until it finally gone caught and started. I also had an instance where I stopped at a traffic light, and the idle dropped to about 500 rpms for about 10 secs before it finally came back up. I finally decided to just replace the battery when the bike barely started after the third of several errands I had run during my work lunch break.
I went with an FTZ-14S from motorcyclebatteries.com, which is the same size as the stock battery, but has a few more cold cranking amps. The first time I hit the starter button after installing it the engine fired up with a “woo woo, vroom!!!”, so I know my slow starting was due to the battery. Maybe my stock battery is somehow defective and just doesn’t hold a charge correctly...?
The next morning when I rode to work I didn’t even think about the new battery, until I noticed the engine seemed to be running a lot smoother. During my 40 minute commute I didn’t notice any running surging whatsoever, although I really didn’t believe the battery could have been the source of the problem. So, for the next week I decided to really focus on how the bike ran in really hot temperatures. Well, I installed the new battery a little over two weeks ago, and in my particular case I think that was the problem. We’ve had some pretty hot temps here in SoCal for a while now, and there have been only a few times where I’ve noticed only a very slight surge or a slight on/off throttle dead spot. But it’s nothing compared to how it ran before…it’s a night and day difference. In fact, I am amazed at how smooth it runs now. I can run in 1st gear at 5-6K, at engine temps well over 200F, and it doesn’t surge at all. Nada...
A few days after installing the battery I decided I had better also do the monitor wire fix, as although my voltage below the high level per the service manual at about 15.1 – 15.2 volts, I was worried that maybe the battery had gotten overcharged and that is what made it fail so quickly. After the wiring fix my voltage is now steady at 14.2 – 14.3 volts. I really don’t think the running voltage was the problem, as the engine definitely ran better after the new battery was installed, but the same after the monitor wire fix.
So…I think my hot surging issue was electrically related, but I’m not sure how. The only thing I can figure is that the overall electrical system would become degraded after the bike fully warmed up, and somehow the battery was part of the equation, although I don't see how the battery could change characteristics depending on engine temperature. Anyway, my advice is that if you experience a similar problem, do yourself a favor and perform all of the wiring fixes/upgrades, but first have the battery checked as a potential source.